Epidemiology and Infectious Diseases

Peer-review medical journal (previously issued with the same name and ISSN 1560-9529 (Print), ISSN 2411-3026 (Online)).

 

Editor-in-chief

Publisher

About

Launch Year: 1996.

The journal covers issues of diagnosis, treatment and prevention of infectious diseases.

Special attention is devoted to clinical analyses of diagnostically difficult cases, analysis of epidemics, new diagnostic and treatment methods, and epidemiological situation in Russia and the rest of the world. The journal publishes official documents issued by the Russian Ministry of Healthcare, Russian Federal Service for Surveillance on Consumer Rights Protection and Human Wellbeing, societies for infectiologists, epidemiologists, microbiologists and parasitologists as well as information on meetings, symposia, and conferences in Russia and the rest of the world.

The journal is aimed at a wide spectrum of researchers and practicing specialists focusing on diagnosis, treatment and prevention of infectious diseases: epidemiologists, infectiologists, microbiologists, primary care physicians, and family medicine specialists.

Indexation

  • Russian Science Citation Index
  • CrossRef
  • Google Scholar
  • Ulrich’s International Periodicals Directory
  • Dimensions

Types of accepted articles

  • narrative reviews
  • systematic reviews and metaanalysis
  • results of original research (experimental, clinical, epidemiological
  • clinical cases and series of clinical cases
  • short communications
  • letters to the editor

Publications

  • regular issues bimonthly, 6 issues per year
  • articles — continuously online (Online First)
  • with NO APC (free of charge for all authors)
  • in Russian and English
  • in hybrid access mode — by subscription or in Open Access with CC BY-NC-ND 4.0 license  (authors are welcome for Optional Open Access (see more)

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卷 29, 编号 6 (2024)

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Original study articles

Characteristics of Unique Imported Vibrio cholerae Strains Which Caused Cases of Acute Intestinal Infection in Moscow in 2023
Monakhova E., Kruglikov V., Podoinitsyna O., Vodopyanov A., Nepomnyashchaya N., Evteev A., Gaevskaya N.
摘要

BACKGROUND: In 2023, two cases of acute intestinal infection caused by identical strains of Vibrio cholerae El Tor carrying the preCTX prophage and the classical allele of the tcpA gene were reported in Russia for the first time. The patients had recently visited Asian countries (Indonesia, Bangladesh, and India). A detailed molecular genetic characterization of the pathogens was required to assess their pathogenic potential.

AIM: To provide phenotypic and genotypic characteristics of Vibrio cholerae O1 strains imported to Moscow in 2023 and isolated from patients with acute intestinal infection.

METHODS: In this study, whole-genome sequences (WGSs) were obtained using the MiSeq Illumina platform. Bioinformatics analysis was performed using Vector NTI Advance, BioEdit, BLASTN, BLASTP, and CARD, as well as the pygenomeviz and biopython packages.

RESULTS: The studied strains belonged to the biovar El Tor, serovar Ogawa, and had identical antibiotic resistance profiles. Their genomes contained the preCTX and RS1 prophages with a unique gene composition. RS1 harbored the rstRcalc gene (Calcutta variant), while the RS2 element of preCTX contained the rstRclass gene (classical variant), as well as an additional orfX gene of unknown function. Within the complete VPI-1 pathogenicity island, the tcp cluster — responsible for the production of toxin-coregulated pili — demonstrated significant differences from prototypes in the tcpF and toxT genes, although their products retained characteristic active domains. The tcpA gene was of the classical type but differed from the prototype by three single nucleotide polymorphisms. The strains also possessed a wide array of intact genetic determinants of pathogenicity factors characteristic for the biovar El Tor, sufficient to express its full pathogenic potential.

CONCLUSION: The analyzed Vibrio cholerae strains were imported from India, Bangladesh, or Indonesia and are linked by a common source of infection and a transmission pathway. The risk of further importation of such or similar strains persists, and the characterized isolates can be used as reference strains for cholera surveillance studies in the Russian Federation.

Epidemiology and Infectious Diseases. 2024;29(6):407-414
pages 407-414 views
Teaching Mathematical Modeling in Epidemiology: Organizational Issues
Saperkin N.
摘要

BACKGROUND: One of the current tasks of higher medical education in epidemiology is the teaching of mathematical and statistical modeling methods for the spread of mass diseases.

AIM: To investigate the existing systems of teaching mathematical modeling and forecasting, with an emphasis on agent-based simulation approaches, in medical universities compared to non-medical and technical universities in Russia.

METHODS: As part of this descriptive and evaluative study, the curricula for the teaching of mathematical modeling, implemented at universities at various educational levels, were explored. The study included the curricula of non-medical universities (n = 31) and medical education institutions (n = 16).

RESULTS: In medical universities, the teaching of mathematical modeling is organized at various levels, including specialist, undergraduate, graduate and postgraduate levels. The total workload of such curricula ranges from 18 to 324 hours. The following specific topics were mentioned in the thematic plans: mathematical epidemiology; the SIR model and its modifications; ordinary differential equations; machine learning and simulation modeling systems in medicine and healthcare; simulation modeling of medical and biological processes, and others. Based on the results of the study, significant differences in the organization of teaching mathematical modeling in non-medical universities were identified.

CONCLUSION: Various levels of education in medical universities include certain aspects of forecasting and modeling the spread of infections. There is a substantial potential for teaching relevant topics in residency and postgraduate programs. In medical universities, mathematical modeling in the field of preventive medicine and epidemiology serves as a tool to foster intellectual curiosity, promote the development of thinking, positively impact the professional orientation of future health system specialists, and contribute to the mathematical component of professional competence in medical education.

Epidemiology and Infectious Diseases. 2024;29(6):415-422
pages 415-422 views

Reviews

Aerosol Disinfection in the System of Preventive and Anti-Epidemic Measures: a Review
Smirnova S., Kameneva A., Zhuykov N., Stagilskaya Y., Egorov I., Avdyunin A.
摘要

Organization and implementation of disinfection measures are among the most effective strategies of non-specific prevention of infectious diseases. Aerosol disinfection has now gained widespread use due to its practicality and efficacy.

A literature search was carried out using such keywords as aerosol disinfection, prevention, anti-epidemic measures, and ventilation in both Russian and English, across the Scientific Electronic Library, eLIBRARY.RU search engine, and Google Scholar. For English-language publications, searches were conducted in PubMed, the National Center for Biotechnology Information (NCBI) database, and Google Patents (Patents.google.com). The search covered a time period of 84 years (1940–2024). A total of 1,751 articles were identified, of which 55 met the selection criteria.

Analysis of the literature revealed that aerosol disinfection, now widespread in many countries and various fields of activity, has a long-standing history dating back to the late 18th century. Aerosol disinfection technologies have become indispensable in the modern world, although issues related to the bactericidal properties of dispersed systems, optimization of disinfection equipment, and the development of quality standards for effective disinfection remain unresolved.

Aerosol disinfection holds a valuable place within the system of preventive and anti-epidemic measures, having a significant impact on reducing the risk of epidemic outbreaks of infectious diseases with various mechanisms of transmission.

Epidemiology and Infectious Diseases. 2024;29(6):423-431
pages 423-431 views
Current State of Vaccine Prophylaxis and Its Resource Supply in the Post-Pandemic Period: a Review
Minaeva V., Golubkova A.
摘要

At present, the global community views vaccination as the most accessible and economically efficient infection control technology, a pathway to active longevity, and one of the most powerful public health tools with proven epidemiological effectiveness. The National Immunization Schedule (NIS) of the Russian Federation is constantly being improved in response to various challenges and changes in the epidemic situation. In recent years, the list of infections for which vaccines have been included in the NIS has expanded, including for epidemic indications; the vaccination strategy has changed in terms of expanding the indications for vaccination in the populations at risk. However, the existing system of vaccination coverage indicators in target groups does not allow for monitoring the timeliness of vaccination initiation, as it only considers those who have completed the immunization process. Vaccinations outside the target age groups do not ensure protection for infants, who are the most vulnerable to infection, and the catch-up and clean-up vaccination strategies do not quickly correct missed vaccination opportunities within the prescribed timelines, which has led to an unstable situation in recent years regarding several vaccine-preventable infections such as measles, pertussis, and mumps.

It should be noted that during the COVID-19 pandemic, the routine vaccination programs for children suffered significantly. A substantial disruption in immunization of varying degrees occurred in all regions monitored by the World Health Organization (WHO). As early as May 2020, in the first year of the pandemic, the WHO reported that at least 80 million children under the age of one year had missed vital vaccinations. The emerging problems can only be addressed promptly through the use of modern digital technologies, with the development of entirely new qualitative indicators for assessing the vaccination coverage of the pediatric population at all levels of outpatient care (local health districts, outpatient departments, ambulatory care centers) and educational institutions for children.

Lack of information on the timeliness of vaccination initiation in paper reports does not allow for prompt assessment and correction of the situation. The transition to digital technologies in vaccination reporting makes is possible to address these shortcomings in real time and implement corrective actions in a timely manner. Another key area in improving epidemiological surveillance of vaccine-preventable diseases is the assessment of the extent to which disease incidence and transmission rates in a given area depend on preventive vaccination coverage, as well as the monitoring of vaccine composition compatibility with the antigenic profiles of circulating genetic variants of pathogens — activities that require modern resource support.

Epidemiology and Infectious Diseases. 2024;29(6):432-443
pages 432-443 views

Historical Articles

History of Anthrax Study: From the Holy Scripture to the First Half of the 19th Century
Nikiforov V.
摘要

Anthrax (also known as Siberian plague) has been known for a very long time and was recognized as a distinct nosological entity many centuries ago, long before the discovery of the causative pathogen responsible for the disease. Today, anthrax is one of the most thoroughly studied infectious diseases. This makes the analysis of historical religious sources (such as the Holy Scriptures and the Torah) and literary works (including Virgil’s “Georgics”, Ovid’s “Metamorphoses”, and a compilation of ancient Greek medical texts “Hippiatrica”) especially interesting, as these texts directly or indirectly describe the devastation caused by anthrax. For example, the fifth, sixth, and tenth plagues of Egypt are often interpreted as referring specifically to anthrax, while the remaining plagues are thought to create conditions conducive to epizootics and epidemics. The spread of the infection across Europe and Asia is well-documented, including references to anthrax outbreaks among animals in Venice in 1598, large-scale epidemics in Germany, Hungary, and Poland between 1709 and 1714, and the extensive circulation of the disease in the early 19th century in Russia, the Netherlands, and England. Anthrax was first introduced to the Americas in Louisiana by French settlers, during the early 1700s. In Rus’, this long-known infection was referred to by a variety of local and regional names, including postrel (from “to shoot” or “to strike suddenly” possibly referring to the sudden onset of the disease), snake postrel (referring to the fulminant form), and fiery vered or ognevik (referring to the carbuncular form). The term Siberian plague first appeared in Russian medical literature in the 1780s, thanks to the dedicated work of S. S. Andreevsky (1760–1818), including his reports “On Siberian Plague” submitted to the Medical Board of the Russian Empire in 1778 and 1789.

Epidemiology and Infectious Diseases. 2024;29(6):444-454
pages 444-454 views
Surgical Hand Antisepsis in the Soviet Union: Stages of Development, Technical Capabilities, and Technologies
Sisin E., Golubkova A., Kozlova I., Ezhova O., Berezikova K., Gorbunova I.
摘要

The earliest references to surgical hand antisepsis in Russia date back to the 18th century and are associated with the Russian physician Daniil Samoylovich, who, during a plague epidemic in Moscow, suggested treating hands with a vinegar-based solution when performing surgical opening of plague buboes. Subsequently, in the late 19th and early 20th centuries, the development of surgical hand antisepsis in Russia was influenced by European surgical schools, though it retained its distinct features shaped by the priority of addressing battlefield surgery needs and the use of available chemical agents with antiseptic properties in practice.

In the Soviet period, methods of surgical antisepsis were adjusted in line with the recommendations of national surgical schools, including adaptations made during wartime. This period was marked by the centralization of scientific research and its discussion within the professional medical community, followed by implementation into practice. The most important achievement of this period was the standardization and simplification of antiseptic techniques, which ensured their effectiveness in military field settings despite scarcity of time and resources.

This article provides a retrospective analysis of literary sources reflecting the evolution of surgical hand antisepsis technologies and practices in the USSR from 1917 to 1991. It highlights the contributions of domestic scientists to the advancement of the theory and practice of surgical antisepsis, as well as their prominent efforts in ensuring biosafety.

Epidemiology and Infectious Diseases. 2024;29(6):455-466
pages 455-466 views