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卷 29, 编号 4 (2024)

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Original study articles

Analysis of the species composition and infection of ticks with pathogens of Lyme disease in the territory of the Republic of Tatarstan for the period 2012–2022

Karpova I., Khasanova G., Sadreeva L., Tyurin Y., Shaykhullin N.

摘要

BACKGROUND: The role of ixodid ticks in the transmission of pathogens of a number of natural focal infections can hardly be overestimated. Analysis of the manifestations of the epizootic process is important for planning preventive and anti-epidemic measures and is an integral component of epidemiological surveillance of natural focal infections.

AIM: To analyze the species composition of ticks and the infection of ticks with borreliosis pathogens in the Republic of Tatarstan for the period 2012–2022.

MATERIALS AND METHODS: An analysis of the species composition of ticks collected by the zoological group of the Center for Hygiene and Epidemiology in the Republic of Tatarstan from environmental objects during the period 2012–2022 was carried out. Testing of the ticks for Borrelia burgdorferi and Borrelia miyamotoi was carried out using the polymerase chain reaction method with hybridization-fluorescent detection. An analysis of statistical observation form No. 2 “Information on infectious and parasitic diseases” (the section “Tick bites”) for the Republic of Tatarstan from 2012 to 2022 was carried out. Statistical processing was performed using descriptive statistics methods in Microsoft Excel.

RESULTS: The total number of people who applied for tick bites in the Republic of Tatarstan in 2012–2022 was 77,703, of which 59,168 (76.2%) were people over 18 years of age. During the study period, 5536 ticks were collected for research on the territory of the Republic of Tatarstan from environmental objects. The species composition of ticks was distributed as follows: Dermacentor reticulatus — 75.4%, Ixodes ricinus — 14.1%, Ixodes persulcatus — 10.5%. Infection of different types of ticks with Borrelia was not the same and was 20.4% for I. persulcatus, 14% for I. ricinus, 4.4% for D. reticulatus. In 4 regions of the republic, from ticks of the species I. ricinus pathogenic genomospecies B. miyamotoi were found (the infestation of this type of tick with B. miyamotoi was 0.4%). Indicators of morbidity of the population with ixodid tick-borne borreliosis and indicators of infection rates for ticks vary in different regions of the republic.

CONCLUSIONS: The dominant species of ixodid ticks in natural epitopes of the Republic of Tatarstan in 2012–2022 were D. reticulatus (75.4% of the total number of collected ticks). For ticks of this species, the lowest level of infection with Borrelia was demonstrated (4.4% of ticks). This may be one of the factors responsible for the low, in comparison with other regions, incidence rates of tick-borreliosis in the Republic of Tatarstan. The identification of ticks of the species I. ricinus infected with B. miyamotoi confirms the need for targeted molecular genetic and serological examination for recurrent fever in patients with non-erythematous forms of febrile illness after an episode of tick bite.

Epidemiology and Infectious Diseases. 2024;29(4):252-259
pages 252-259 views

Epidemiological and clinical characteristics of cases and detection of pathogens’ markers of tick-borne infections in the Tomsk region

Ilyinskikh E., Bondarenko E., Voronkova O., Karpova M., Filatova E., Reshetova A., Poltoratskaya T., Sizova N., Koryakova O.

摘要

BACKGROUND: Among the spectrum of the tick-borne infections, Lyme borreliosis and tick-borne encephalitis are most often recorded in the Tomsk region, however it is obviously that possible range of the pathogens is not limited to these ones.

AIM: To make epidemiological and clinical characteristics of cases and detect frequencies of pathogen’s markers of tick-borne infections among adult patients applying serological and molecular genetic techniques in the Tomsk region during 2020–2023.

METHODS: A single-center prospective sample study was conducted applying a comprehensive approach in peripheral blood specimens obtained from 197 patients with suspected tick-borne infections hospitalized during 2020–2023. To verify the diagnoses of tick-borne encephalitis or Lyme borreliosis, specific immunoglobulins of classes M and G to the antigens of virus of tick-borne encephalitis and Borrelia burgdorferi s.l. were determined in paired blood serum samples applying enzyme-linked immunosorbent assay. Additionally, the polymerase chain reaction was used to detect genetic markers of virus of tick-borne encephalitis, B. burgdorferi s.l., B. miyamotoi, Rickettsia spp., Coxiella burnetii, and Francisella tularensis. Epidemiological surveillance data of incidence rates of tick-borne infections obtained from official reports were analyzed as well. MS Office Excel 2010 software was used to calculate frequency morbidity measures.

RESULTS: We verified the final diagnosis of tick-borne encephalitis in 52 (26.4%) patients, Lyme borreliosis in 116 (58.9%) patients, co-infection of tick-borne encephalitis and Lyme borreliosis 15 (7.6%) patients, hard tick relapsing fever caused by B. miyamotoi in 8 (4.1%) patients, coinfection of Q fever caused by C. burnetii with tick-borne encephalitis or Lyme borreliosis in 4 (2.0%) patients, and coinfection of tularemia with tick-borne encephalitis or Lyme borreliosis in 2 (1.0%) cases. We identified markers of tick-borne encephalitis and Lyme borreliosis pathogens by polymerase chain reaction in 3.6% and 4.1% of the patients. Most number of individuals with tick bites, and the highest incidence rates of Lyme borreliosis and tick-borne encephalitis were recorded in the suburbs of Tomsk. The age groups of 40–59 years, and elderly people 60 years and older were predominated among the patients.

CONCLUSIONS: It was found out that, in addition to Lyme borreliosis and tick-borne encephalitis, there were such tick-borne infections as tick relapsing fever, Q fever, and tularemia in the Tomsk region in the 2020–2023 period.

Epidemiology and Infectious Diseases. 2024;29(4):260-273
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Ecological and epidemiological characteristics of tick-borne encephalitis and ixodic tick-borne borreliosis incidence according to the data of the Arkhangelsk region for 2012–2022

Spirin I., Mironov D., Kharitonenko A., Leontyeva O.

摘要

BACKGROUND: The increase of ticks infected with borrelia and tick-borne encephalitis virus, as well as the impact of anthropogenic factor on the ecosystem of the northern region determines the need to study possible risk factors and epidemiological trends in the incidence of tick-borne encephalitis and ixoid tick-borreliosis.

AIM: To conduct a retrospective ecological and epidemiological analysis of regional peculiarities of the epidemic process of tick-borne encephalitis and ixoid tick-borreliosis in the Arkhangelsk region in comparison with similar indicators in the North-West Federal District and Russia for 2012–2022.

MATERIALS AND METHODS: The work was carried out in accordance with the ecological research design. Statistical data of the Unified Interdepartmental Information and Statistical System, as well as statistical annual forms of the Department of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare in Russia and the Arkhangelsk region were used as the information base. The registered cases of tick-borne encephalitis and ixoid tick-borreliosis morbidity in the Arkhangelsk region, as well as in Russia and the Northwestern Federal District as a whole for 2012–2022 were evaluated. Time series analysis was performed using Microsoft Excel 2019. The study also analyzes the dynamics of climatic factors in the Arkhangelsk region and its possible impact on the distribution and migration of ixodid ticks across the territory of the European North of Russia. Correlations were assessed by evaluating Pearson’s correlation criterion using the Google Collaboratory interface.

RESULTS: The number of tick bites in the Arkhangelsk region throughout the entire study period significantly exceeds the similar indicator (per 100 thousand population) in Russia. The incidence of tick-borne encephalitis in the Arkhangelsk region significantly exceeds that in both the Russian Federation and the Northwestern Federal District, and exceeded the average annual rate in Russia more than 3 times, although it had a faster rate of decline (5.7% vs. 3.7% annually). The incidence of ixoid tick-borreliosis has a paradoxical character due to the fact that throughout almost the whole period it is below the all-Russian level (3.19 per 100,000 population in Arkhangelsk region against 4.41 in the Russian Federation), while the incidence in the Northwestern Federal District is 1.3 times higher on average.

CONCLUSIONS: During the last decade the incidence of tick-borne encephalitis in the Arkhangelsk region remains stably high in comparison with both the Russian Federation and the Northwestern Federal District. The incidence of ixoid tick-borreliosis corresponds to the long-term average for Russia, with a more pronounced downward trend (4.7% vs. 1.7%). The territory of the Arkhangelsk region is subject to the trend of increasing average annual temperatures, and anthropogenic interventions, in particular, abundant deforestation, lead to the destruction of established ecosystems and open new opportunities and territories for ticks, which in the future may negatively affect the established trends of morbidity. The analysis confirms the need to develop and adopt organizational measures aimed at the development of epidemiological and epizootological monitoring.

Epidemiology and Infectious Diseases. 2024;29(4):274-284
pages 274-284 views

Development of an INDEL typing system for ctx+ strains of Vibrio cholerae from the seventh pandemic

Vodopyanov S., Vodopyanov A.

摘要

BACKGROUND: The seventh cholera pandemic is accompanied by the formation of Vibrio cholerae clones with new genetic properties, including those with the ability to spread pandemically and cause diseases with a more severe clinical course. The widespread distribution of such genetic variants of Vibrio cholerae and the possibility of their introduction into the territory of the Russian Federation necessitate constant comprehensive monitoring using modern molecular genetic technologies.

AIM: To improve INDEL typing of ctx+ strains of V. cholerae of the seventh pandemic by using additional INDEL loci.

Materials and methods: A bioinformatic analysis of 2105 full-genome sequences of toxigenic ctxAB+tcpA+ strains of Vibrio cholerae O1 El Tor from open databases was carried out in order to search for INDEL loci for molecular typing. Based on the convenience criterion for allele size identification, eight INDEL loci were selected. Three loci have been described previously, and five were identified as a result of this work. The designed primers formed amplicons ranging in size from 67 to 390 base pairs, which made it possible to confidently identify them during gel electrophoresis.

Results: The distribution of alleles formed 11 unique INDEL clusters, which we designated A-K. Based on the number of strains within the clusters, three types of clusters were identified: major (A, B and C) made up 89% of the total number of sequences studied, intermediate (D, E, F, G and H) 10.5% of the genomes. Three minor clusters (I, J and K) were represented by single strains. Four clusters united strains isolated in the 20th century (A — in 1941, F — in 1957, G — in 1993, E — in 1999), and seven clusters — in the 21st century in the period from 2003 to 2016. In the period from 2019 to 2023, representatives of INDEL clusters were active: A, B, D and E.

ConclusionS: The study of the timing of circulation suggested that representatives of different clusters have different epidemic potential, which was manifested in the absence of isolation of strains of some clusters in recent years. A comparative study of INDEL typing with SNP typing in the in silico analysis of 378 genomes of strains isolated on the African continent indicates that the proposed INDEL typing method is not inferior to SNP typing in terms of resolution.

Epidemiology and Infectious Diseases. 2024;29(4):285-294
pages 285-294 views

Reviews

The priority of bacteria Staphylococcus spp. in the etiology of purulent septic infections through the prism of new diagnostic capabilities: A literature review

Borisov A., Golubkova A., Ruzhentsova T.

摘要

Representatives of the genus Staphylococcus spp. occupy a leading place in the etiology of infections caused by opportunistic bacteria. Staphylococcus spp., being symbionts of humans and/or animals, are constantly located on the surface of the skin and mucous membranes, which are their natural habitats.

The importance of bacteria of the genus Staphylococcus spp. It is determined by their significant distribution in the population, as well as among patients and medical personnel, due to their transient and resident carrier, as well as their high adaptive potential, due to their ability to form biofilms and produce enzymes that provide them with protection from antimicrobial drugs.

Modern molecular genetic methods for identifying Staphylococcus spp. and assessing their epidemic potential allow us to rethink their importance in the etiology of nosocomial purulent septic infections in a new way. It is no coincidence that they entered the group of ESCAPE pathogens with a high level of priority.

The ability of staphylococci to form biofilms ensures their survival in various hospital/environmental facilities, which in the conditions of a medical organization become additional, or so-called “inanimate” sources of infection.

In recent years, despite the increasing role of coagulase-negative staphylococci in the etiology of purulent septic infections, Staphylococcus aureus remains the most significant causative agent of purulent septic infections.

Epidemiology and Infectious Diseases. 2024;29(4):295-308
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Case reports

A case of amebiasis with multiple liver abscesses: A way to diagnosis

Burgasova O., Lebedev S., Klimova I.

摘要

Amebiasis is a protozoal disease common for tropical countries. It is not frequently diagnosed in Central Russia, and is mainly seen in travelers, people with immunodeficiency, as well as in men who have sex with men. The main manifestation of the disease is intestinal damage with the development of diarrhea. With the hematogenic spread of the pathogen, extra-intestinal lesions of different organs may develop with the formation of abscesses in them. The liver, lungs, brain, and skin are most often involved in the inflammatory process. In this article, we describe a case of extrahepatic amebiasis with multiple liver abscesses, which presented difficulties in diagnosis. We provide details of observation and key laboratory findings as well as results of radiological examinations. Appearance of imported amebiasis in the Moscow region proves its actual importance and significance of timely diagnosis and etiotropic therapy. The aim of the article is to draw attention to the problem of diagnosis and prophylaxis of amebiasis in Central Russia as a result of migration and tourism to endemic territories.

Epidemiology and Infectious Diseases. 2024;29(4):309-316
pages 309-316 views