Open Access Open Access  Restricted Access Access granted  Restricted Access Subscription Access

Vol 89, No 11 (2024)

Cover Page

Full Issue

Open Access Open Access
Restricted Access Access granted
Restricted Access Subscription Access

Articles

An Intricated Pas de Deux of Addicted Brain and Body Is Orchestrated by Stress and Neuroplasticity

Gulyaeva N.V., Peregud D.I.

Abstract

Dependence on psychoactive substances is a phenomenon that is based on the alterations of common molecular cellular mechanisms, structures and neuronal networks underlying normal brain functioning and realizing stress response, reinforcement and aversion, learning and memory. As a result, aberrant neuroplasticity states associated with somatic changes are formed, which determine the pathogenesis and symptoms of chemical dependence and at the same time can be considered as targets for the development of therapies for such addictions. An integrative scheme of stress and neuroplastic changes participation in the formation of the vicious circle of pathological substance dependence syndrome based on a holistic approach is presented.

Biohimiâ. 2024;89(11):1769-1774
pages 1769-1774 views

Invlovement of Visceral Systems in Substance Use Disorders: Translational Aspects of Interaction Between Central and Peripheral Mechanisms

Peregud D.I., Gulyaeva N.V.

Abstract

Structural and functional changes in the neuroendocrine, neuromediator, and neuromodulator systems in brain areas related to reward and stress reactivity underlie the development of substance use disorders. Chronic intoxication provokes somatic diseases and aggravates existing pathologies. Thus, substance use disorders and somatic diseases worsen clinics of each other. Elucidation of common biochemical pathways overlapping between comorbidities may be a basis for the development of new effective pharmacotherapy as well as drug repositioning. Here we reviewed the molecular mechanisms underlying integration of visceral systems into the central mechanisms of substance use disorders.

Biohimiâ. 2024;89(11):1775-1798
pages 1775-1798 views

Alcohol-Induced Activation of the Chemokine System and the Activation of Neuroinflammation

Mikhalitskaya E.V., Vyalova N.M., Bokhan N.A., Ivanova S.A.

Abstract

Chemokines are immunoregulatory proteins with pleiotropic functions involved in processes of neuromodulation, neurogenesis and neurotransmission. The chemokines effect on the central nervous system plays an important role in modulating various conditions. It can have negative consequences for central nervous system functions, including the development of alcohol-related disorders. In the review we analyzed the available literature data devoted to the problem of chemokines participation in the pathogenesis, formation of the clinical picture and remission of alcohol use disorder both in animal models and in the study of patients with alcoholism. Presented data confirm the hypothesis that alcohol-induced chemokine production can modulates the processes of chronic neuroinflammation. Thus, the data summarized and presented in this review are devoted to the current direction of research in the field of psychiatry, which will be in demand by both scientists and clinical specialists.

Biohimiâ. 2024;89(11):1799-1815
pages 1799-1815 views

Associations Oxidative Stress Peripheral Markers with Clinical Characteristics and Inflammatory Factors in Alcoholic Patients

Prokopieva V.D., Vetlugina T.P., Epimakhova E.V., Boyko A.S., Bokhan N.A.

Abstract

A fundamental problem in narcology is to clarify the mechanisms of development of alcohol dependence (AD), in the pathogenesis of which disturbances in redox processes and inflammation play an important role. Identification of associations between biological and clinical parameters clarifies the molecular mechanisms of disease pathogenesis. The aim of the work was to study peripheral markers of oxidative stress (OS) in patients with AD in the early period of post-abstinence state and to identify their relationship with the clinical characteristics of the disease and inflammatory factors. The parameters of 84 male AD patients were determined; the average age was 44.3 ± 8.2 years. Clinical characteristics were analyzed: patient age, age of alcohol withdrawal syndrome (AWS) formation, duration of the disease, duration of AWS. OS markers were determined in blood plasma – protein oxidation products (carbonyl proteins, CP) using 2,4-dinitrophenylhydrazine; lipids (products reacting with thiobarbituric acid (TBA), TBA-RP); DNA (8-hydroxy-2′-deoxyguanosine, 8-OH-dG). Inflammatory mediators – proinflammatory cytokines (IFNγ, IL-1β, IL-6, IL-8, IL-17A, TNFα) were determined in blood serum. Control for biological studies – blood samples of 80 conditionally healthy men, average age 40.9 ± 9.6 years. In patients with AD, an increase in CP, TBA-RP and all cytokines was detected compared to controls (p < 0.001); the concentration of 8-OH-dG did not differ from the control. The following were found: a direct connection between TBA-RP and the duration of the disease; inverse relationship between CP and the age of formation and duration of AWS. CP had an inverse relationship with IL-6. Positive correlations were found between 8-OH-dG and IL-6, TBA-RP and IL-8, TBA-RP and TNFα. Thus, the early period of the post-withdrawal state in AD patients is characterized by pronounced OS and inflammation. The results obtained expand knowledge about the integrative contribution of OS and inflammation factors to the pathogenesis of AD and can be used in the development of new treatment methods.

Biohimiâ. 2024;89(11):1816-1823
pages 1816-1823 views

Study of Neuroinflammation in the Rat Hippocampus during Ethanol Exposure and Pharmacologic Correction with Azithromycin: New Data and Future Perspectives

Airapetov M.I., Eresko S.O., Shamaeva S.A., Bychkov E.R., Lebedev A.A., Shabanov P.D.

Abstract

With prolonged ethanol ingestion, disturbances in the emotional spectrum develop, and memory problems are noted. These symptoms may be mediated by the development of neurochemical changes in the hippocampus of the brain. Although there is evidence that the hippocampus is vulnerable to chronic alcohol intoxication and the development of neuroinflammation and neurodegeneration in this brain region, the key molecular mechanisms have not been identified. The aim of the study was to investigate changes in the immune system in the periphery as well as in the hippocampus of the rat brain during ethanol exposure and during pharmacological correction with azithromycin (AZM). Long-term ethanol exposure was modeled by injecting rats with a 20% ethanol solution (4 g/kg) for 4 weeks. General biochemical and clinical blood analysis was performed in animals. The expression levels of cytokine genes (Il1β, Ccl2, Il6, Il11, Il13, Tnfα, Tgfβ) and toll-like receptor system genes (Tlr3, Tl4, Tlr7, Nfkb1, Hmgb1) and TLR system-related microRNA molecules (miR-182, miR-155-5p, miR-96-5p, miR-let-7b) were evaluated in the hippocampus. IL-1β protein content was also assessed in the hippocampus. Prolonged alcoholization caused an increase in mRNA and protein levels of IL-1β, and a decrease in mRNA levels of Tnfα, Il11, Tlr3, and Tlr7. The contents of miR-let-7b, miR-96, and miR-155 were downregulated in the hippocampus during long-term alcoholization. Elevated Il1β mRNA and protein levels and Hmgb1 mRNA levels were maintained under conditions of ethanol withdrawal. Tlr3 mRNA levels were decreased under withdrawal. Administration of AZM reduced IL-1β, TLR3 and HMGB1 mRNA levels under conditions of ethanol withdrawal, and at higher doses of the drug, a decrease in IL-1β protein levels in the hippocampus of rat brain was observed. Thus, the study provided new insights into the mechanisms of neuroinflammation in the brain hippocampus during prolonged exposure to ethanol and upon withdrawal. The results obtained allowed us to outline a number of tasks for further studies in this direction.

Biohimiâ. 2024;89(11):1824-1836
pages 1824-1836 views

Neuroimmune Characteristics of Animals with Prenatal Alcohol Intoxication

Shamakina I.Y., Anokhin P.K., Ageldinov R.A., Kokhan V.S.

Abstract

Neuroinflammation can be an important factor of many central nervous system (CNS) deficits including cognitive dysfunction, affective disorders and addictive behavior associated with prenatal alcohol exposure and presented in early adulthood. In this study we used an experimental rodent model of prenatal alcohol (PA) exposure (consumption of a 10% ethanol solution by female Wistar rats throughout pregnancy), multiplex immunofluorescence analysis of interleukins (IL-1α, IL-1β, IL-3, IL-6, IL-9 and IL-12), tumor necrosis factor (TNF-α) and chemokine CCL5, as well as quantitative real-time PCR to assess the level of cytokine mRNA in the prefrontal cortex of sexually mature (PND60) offspring – male and female rats with prenatal alcohol intoxication and control animals. A significant decrease in the content of TNF-α and interleukins IL-1β, IL-3, IL-6, IL-9 was established in the prefrontal cortex of male, but not female PA offspring. Importantly, PA males also showed a decrease in the level of TNF-α mRNA in the prefrontal cortex by 45% compared to the control males, which may underlie a detected decrease in its content. Taken together, our study demonstrates that a number of neuroimmune factors are regulated in a sex-specific manner in the prefrontal cortex and are differentially affected in males and females by prenatal exposure to alcohol. Sex factor must be taken into account when conducting further translational fetal alcohol spectrum disorders and developing new methods for prevention and therapy.

Biohimiâ. 2024;89(11):1837-1846
pages 1837-1846 views

Features of the Behavior and Activity of Blood Enzymes of the Offspring of Rats Conceived by Their Father Under the Influence of Alcohol

Sudakov S.K., Bogdanova N.G., Nazarova G.A., Zolotov N.N.

Abstract

Quite often, conception of a child occurs after consuming small doses of alcohol. However, the effect of this factor on offspring has not been studied at all. The aim of this study was to study the level of motor activity, anxiety-like and depressive-like behavior, sensitivity to the analgesic effect of ethanol, as well as the activity of the enzymes DPP-IV, PEP and ADG in the blood of rats whose fathers received ethanol immediately before mating. As a result of the experiments conducted, it was found that males conceived by fathers who were intoxicated have significant differences in behavior compared to control animals. Thus, motor activity in rats conceived by males under the influence of alcohol was 2-2.5 times less intense, they decreased the severity of anxiety-like and depressive-like behavior. In such animals, the activity of DPP-IV and ADG was increased and the activity of PEP in the blood was reduced. In rats conceived by fathers under the influence of alcohol, the analgesic effect of ethanol decreased, and there was also a decrease in the reaction of ADG, DPP-IV and PEP to ethanol administration. It is assumed that a single use of ethanol by male rats immediately before mating leads to a decrease in the methylation of paternal inherited genes in offspring. As a result, the activity of a number of enzymes may change, which leads to a change in the balance of neuropeptides involved in formation of animal behavior.

Biohimiâ. 2024;89(11):1847-1855
pages 1847-1855 views

Purmorphamine Affects Anxiety-Like Behavior and Expressions of Hedgehog Pathway Components in Rat Brain after Withdrawal

Peregud D.I., Shirobokova N.I., Kvichansky A.A., Stepanichev M.Y., Gulyaeva N.V.

Abstract

The Hedgehog (Hh) pathway underlies fetal alcohol syndrome during prenatal alcohol exposure. The involvement of Hh in the mechanisms of alcohol consumption in adulthood remains obscure. We aimed to investigate a role of Hh cascade in voluntary ethanol drinking, anxiety-like behavior during early abstinence and changes in expressions of Hh cascade components in brain regions. Intermittent access to 20% ethanol in a two-bottle choice procedure has been used to model voluntary alcohol drinking in Wistar male rats. Purmorphamine, an activator of the Hh cascade that exhibits Smoothened (Smo) receptor agonist properties, was administered systemically at a dose of 5 mg/kg before drinking sessions from 16 to 20. Purmorphamine had no effect on the level of ethanol preference, but the group with access to alcohol and receiving purmorphamine showed a change in anxiety-like behavior during early withdrawal period. Alcohol consumption affected Sonic hedgehog (Shh) and Patched (Ptch) mRNA content only in the amygdala. In the group that had access to ethanol and received purmorphamine, Shh mRNA levels in the amygdala were negatively correlated with time spent in the open arms of the elevated plus maze in the test of anxiety-like behavior. Thus, it was demonstrated for the first time that alterations of the Hh cascade by purmorphamine administration does not affect voluntary alcohol drinking, but Hh is possibly involved in the formation of anxiety during early withdrawal through specific changes in Hh cascade components in the amygdala.

Biohimiâ. 2024;89(11):1856-1869
pages 1856-1869 views

Prenatal Hypoxia Predisposes to Impaired Expression of the chrna4 and chrna7 Genes in Adult Rats Without Affecting Acetylcholine Metabolism during Embryonic Development

Vetrovoy O.V., Potapova S.S., Stratilov V.A., Tyulkova E.I.

Abstract

Previous studies have shown that the combined effect of fetal hypoxia and maternal stress hormones predetermines tendency to nicotine addiction in adulthood. This study in rats aimed to investigate the effect of prenatal severe hypoxia (PSH) on acetylcholine metabolism in the developing brain, as well as on expression of acetylcholine receptors chrna4 and chrna7 in both the developing brain and adult brain structures following nicotine consumption. In the developing brain of PSH rats, no changes were found in the activity of choline acetyltransferase (ChAT) and acetylcholinesterase (AChE) or disturbances in the acetylcholine levels. However, decreased chrna4 expression was detected on the day 15 of pregnancy, while elevation in the chrna7 expression was observed on the days 15 and 16 of embryogenesis. In adulthood, the consequences of PSH were manifested as decreased expression of chrna4 in the medial prefrontal cortex (PFC), nucleus accumbens (NAcc), and hypothalamus (HT), decreased expression of chrna7 in the PFC and hippocampus (HPC). Whereas, nicotine consumption did not decrease the expression levels of chrna4 and chrna7 compared to the control group in the adult PSH rats. Thus, prenatal hypoxia predisposes to impaired expression of the chrna4 and chrna7 genes in adult rats without affecting acetylcholine metabolism during embryonic development.

Biohimiâ. 2024;89(11):1870-1881
pages 1870-1881 views

Low Molecular Weight Neurotrophin-3 Mimetics, Distinct in the Pattern of Activation of Postreceptor Signaling, Attenuate the Manifestations of Morphine Withdrawal in Rats in Different Ways

Kolik L.G., Konstantinopolsky M.A., Nikolaev S.V., Logvinov I.O., Antipova T.A., Gudasheva T.A.

Abstract

The accumulated data suggest that changing activity levels of tyrosine kinase receptor signaling pathways may regulate opiate-related neuroadaptation of the noradrenergic system. Neurotrophin-3 (NT-3) interacts with tropomyosin receptor kinases (TRK), binding predominantly to TRKC receptors, which are expressed in noradrenergic neurons of locus coeruleus. Taking into account the difficulties of delivering full-size neurotrophins to the CNS after systemic administration, low-molecular mimetics of the 4th loop of NT-3, hexamethylenediamide bis-(N-monosuccinyl-L-asparaginyl-L-asparagine) (GTS-301) and hexamethylenediamide bis-(N-γ-hydroxybutyril-L-glutamyl-L-asparagine) (GTS-302), interacting with TRKC and TRKB receptors, were synthesized. The aim of this work was a comparative study of NT–3 mimetics effect on the manifestations of morphine withdrawal symptoms in albino rats with opiate dependence, as well as the features of activation of postreceptor signaling pathways by NT–3 mimetics. The dipeptides GTS-301 and GTS-302 after acute administration at doses of 0.1, 1.0 and 10.0 mg/kg, i.p., had a dose-dependent effect on the specific signs of morphine withdrawal with the most effective dose of 1.0 mg/kg. The maximum reduction in the total morphine withdrawal syndrome index for GTS-301 was 31.3% and for GTS-302 – 41.4%. Unlike GTS-301, GTS-302 weakened mechanical allodynia, reducing tactile sensitivity. When studying the activation of postreceptor signaling pathways by NT-3 mimetics on a culture of HT-22 hippocampal cells, it was shown that they had a different pattern of postreceptor signaling: GTS-302 (10−6 M), like NT-3, activated all three MAPK/ERK, PI3K/AKT/mTOR and PLCy1, while GTS-301(10−6 M) – only MAPK/ERK- and PLCy1. Thus, the revealed features of attenuation of morphine withdrawal syndrome in rats after acute GTS-301 and GTS-302 administration may be associated with a different pattern of activation of postreceptor pathways.

Biohimiâ. 2024;89(11):1882-1892
pages 1882-1892 views

Extracellular Vesicles as Promising Markers of Addictive Disorders

Severtsev V.V., Pavkina M.A., Ivanets N.N., Vinnikova M.A., Yakovlev A.A.

Abstract

The studying the role and condition of small extracellular vesicles (sEV) in mental and addictive disorders is an extremely promising area. SEV contain proteins on the membrane that protect against destruction by their own immunity, and due to their size, they are able to cross the blood-brain barrier. These properties make it possible to consider sEV as potential biomarkers reflecting the processes occurring in the brain, and at the same time available for study in peripheral blood samples. Studies have shown that the amount, biogenesis and contents of explosives change significantly when exposed to psychoactive substances both in vitro and in vivo. The results of the analysis of modern literature demonstrate the presence of numerous potential markers of addictive pathology among the loads carried by sEV, nevertheless, the real diagnostic significance of each of them requires to be studied. Many data indicate the effect of psychoactive substances on GTPases of the Rab family, Toll-like receptors, the complement system and cytokines. Also, in several studies, sex differences in sEV changes were found in response to substance exposure. Most studies indicate the involvement of sEV in the regulation of neuroinflammatory processes, interaction between glial cells and neurons, as well as between peripheral cells and cells of the central nervous system. The authors of the review formulated a hypothesis about the presence of two mechanisms-stages in which sEV is involved: “fast” – in response to the effects of substances, providing neuroplasticity, and “slow” – the result of impaired biogenesis of sEV and the appearance of aberrant vesicle variants.

Biohimiâ. 2024;89(11):1893-1909
pages 1893-1909 views

Regular articles

The Diversity of Circulating Tumor Markers: a Trend Towards a Multimodal Liquid Biopsy

Kuligina E.S., Yanus G.A., Imyanitov E.N.

Abstract

Over the past decade, liquid biopsy (LB) has become a routine diagnostic test essential for the treatment of malignant tumors of various localizations. Its capabilities include early diagnosis, molecular genotyping, prognosis, prediction, and monitoring of tumor response. Typically, liquid biopsy involves the extraction of a single type of tumor-derived molecules or cellular elements from blood and subsequent molecular analysis. These elements may include circulating tumor DNA (ctDNA), circulating tumor cells (CTCs), circulating RNA (ctRNA), or the contents of extracellular vesicles (exosomes). Despite the technical sophistication of molecular analysis methods for circulating biomarkers, this diagnostic approach has limited relevance. In a significant proportion of cancer patients (ranging from 10 to 50%, depending on the tumor type), none of these analytes can be detected and analyzed, despite the presence of large, progressing neoplastic foci in the body. It seems reasonable to posit that heterogeneous fractions of circulating tumor-specific biomarkers complement each other, thus, the simultaneous analysis of several fractions will not only increase the sensitivity of the method but also more accurately characterize and predict the clinical situation. This review examines the possibilities and advantages of applying a combined multiparametric approach to liquid biopsy, which involves testing multiple circulating analytes in a single blood sample.

Biohimiâ. 2024;89(11):1910-1923
pages 1910-1923 views

The Role of MMP-2 and MMP-9 in the Relationship of Inflammation, Fibrosis and Apoptosis During the Progression of Non-Alcoholic Fatty Liver Disease and the Diagnostic Significance of the Plasma Level of Their Active Forms

Kurbatova I.V., Topchieva L.V., Dudanova O.P., Shipovskaya A.A.

Abstract

MMP-2 and MMP-9 play an important role in the pathogenesis of chronic liver diseases, participating in the processes of inflammation and fibrosis. Their role in the progression of non-alcoholic fatty liver disease (NAFLD) is poorly understood. The analysis of MMP-2, -9 levels in the blood plasma of patients with different forms of NAFLD (liver steatosis (LS) and non-alcoholic steatohepatitis (NASH) of weak (-WA), moderate (MA), high (-HA) activity without pronounced fibrosis) was performed. Correlations between the levels of MMP-2, -9 and mRNA of the genes MMP2, MMP9, ADAM17, NLRP3, caspase 3 activity in peripheral blood leukocytes (PBL), TNFα, IL-6, sIL-6R, cytokeratin-18 fragments in plasma were assessed. In steatosis, the levels of MMP2 gene mRNA in PBL and MMP-2 in plasma are lower than in the control, and the expression of the NLRP3 gene in PBL is increased relative to other groups. In NASH-WA, the level of MMP-9 is higher than in the control, LS, and NASH-MA, which can be associated with the activation of inflammation during the transformation of LS into NASH. The plasma level of MMP-9 over 389.50 pg/ml is diagnostically significant for the detection of NASH-WA among steatosis patients (AUC ROC = 0.818, 95% CI = 0.689–0.948, p < 0.001). In NAFLD, the level of MMP-9 can be associated not only with inflammation, but also with apoptosis. ADAM17 probably plays a certain role in this regard. In advanced NASH, hepatocyte apoptosis is increased, the level of caspase 3 activity in PBL is increased, the level of MMP-9 in the blood is reduced to the level of the control and LS. In NASH-HA, the level of mRNA of the ADAM17 gene in PBL is increased compared to the control, NASH-WA and NASH-MA. Thus, MMP-2 and MMP-9 are involved in the pathogenesis of NAFLD already at early stages and their level in the blood can be associated with the presence and activity of inflammation in the liver parenchyma.

Biohimiâ. 2024;89(11):1924-1949
pages 1924-1949 views

(Strept)avidin Binds Glycoconjugates

Shilova N.V., Polyakova S.M., Nokel A.Y., Lipatnikov A.D., Gordeeva E.A., Lavrentyeva M.V., Bovin N.V.

Abstract

Fluorescently labeled and conjugated (strept)avidin is widely used for imaging of biotinylated molecules in immunological assays and histochemistry. The presented article shows that in addition to biotin, these proteins bind a number of glycans, including fragments of glycoprotein and glycolipid chains of mammals, in particular, antigens of the ABO blood system, oligolactosamines, 6-O-sulfated oligosaccharides. This interaction is inhibited in a dose-dependent manner by glycans in a form of polymeric (but not monomeric) conjugates at the micromolar concentration level, i.e. requires polyvalence. Taking into account the cluster organization of cell glycans (glycoproteins and glycolipids), when analyzing objects containing carbohydrates, this property is a potential source of error, that can be prevented by avoiding a large excess of (strept)avidin in the analytical system.

Biohimiâ. 2024;89(11):1950-1955
pages 1950-1955 views

Vimentin and Desmin Intermediate Filaments Maintain Mitochondrial Membrane Potential

Dayal A.A., Parfentyeva O.I., Huiying W., Shakhov A.S., Alieva I.B., Minin A.A.

Abstract

Intermediate filaments (IF) are one of the three main components of the cytoskeleton in animal cells, characterized by the diverse range of proteins that represent them in different cell types. They provide mechanical strength to cells and help position the nucleus and various organelles within the cell. Desmin is an IF protein characteristic of muscle cells, while vimentin, which has a similar structure, is found in many mesenchymal cells. During myogenesis and the regeneration of damaged muscle tissue, both of these proteins can be expressed, forming a mixed IF network. Each protein is known to regulate mitochondrial function in the cells where it is present, including mitochondrial localization and the maintenance of mitochondrial membrane potential. However, the regulation of mitochondrial function in cells with mixed IFs remains unclear. To investigate how the simultaneous presence of these proteins affects mitochondrial membrane potential, we utilized BHK21 cells as a model system, expressing both vimentin and desmin IFs. The expression of either protein individually or both proteins simultaneously was suppressed using gene knockout and/or RNA interference. It was found that removal of either protein did not affect the mitochondrial membrane potential, which remained unchanged compared to when both proteins were present. Simultaneous removal of both proteins resulted in a 20% reduction in mitochondrial membrane potential, indicating that vimentin and desmin both play a critical role in its maintenance.

Biohimiâ. 2024;89(11):1956-1965
pages 1956-1965 views

Dual-Reporter SARS-CoV-2 Replicon for Screening Viral Polymerase Inhibitors

Korolev S.P., Shulepova A.A., Anisenko A.N., Galkin S.O., Alexandrova L.A., Yasko M.V., Matyugina E.S., Novikov M.S., Khandazhinskaya A.L., Kochetkov S.N., Gottikh M.B.

Abstract

To prepare a safe cellular system for testing inhibitors targeting the RNA-dependent RNA polymerase (RdRp) of SARS-CoV-2, a genetic construct containing viral cDNA with two blocks of reporter genes while lacking genes encoding the structural S, E and M proteins was engineered. The first reporter block, consisting of renilla luciferase and green fluorescent protein (Rluc-GFP), located upstream of the SARS-CoV-2 5′-UTR. Meanwhile, the second block, represented by firefly luciferase and red fluorescent protein (Fluc-RFP), was positioned downstream of the transcription regulatory sequence (TRS-N). Although the first block of reporter genes can be transcribed by both viral RdRp and cellular polymerases, the second block can only be transcribed by the viral polymerase, aligning with the Coronaviridae discontinuous transcription mechanism. This allowed us to accurately assess the effectiveness of viral RdRp inhibition. To facilitate the search for nucleoside RdRp inhibitors the cell line was obtained expressing herpes simplex virus thymidine kinase which provides the first stage of nucleoside phosphorylation. When screening the ability of a number of compounds to inhibit the catalytic activity of SARS-CoV-2 RdRp, we first discovered the antiviral activity of 2′-amino2′-deoxyadenosine and adenosine-N1-oxide, exceeding the activity of molnupiravir, a therapeutic agent used in the treatment of COVID-19.

Biohimiâ. 2024;89(11):1966-1981
pages 1966-1981 views

LncRNA Genes of the SNHGs Family: Cometylation and Common Functions in Ovarian Cancer

Braga E.A., Filippova E.A., Uroshlev L.A., Lukina S.S., Pronina I.V., Kazubskaya T.P., Kushlinsky D.N., Loginov V.I., Fridman M.V., Burdenny A.M., Kushlinsky N.E.

Abstract

Long non-coding RNA (lncRNA) genes of the small nucleolar RNA host gene family (SNHGs) may participate in oncogenesis both through regulatory functions inherent to lncRNA and through their influence on the formation of small nucleolar RNAs and ribosome biogenesis. The aim of this work is to evaluate changes in the methylation level and the degree of comethylation of a group of lncRNA genes of the SNHGs family (SNHG1, GAS5/SNHG2, SNHG6, SNHG12, SNHG17) in clinical samples of ovarian cancer (OC) for different stages of cancer as a criterion for the similarity of their role in oncogenesis. On a representative set of 122 OC samples, MS-qPCR showed a statistically significant (p < {0.01-0.0001}) increase in the methylation level of 5 studied lncRNA genes. A statistically significant relationship was shown between the increased methylation level of GAS5, SNHG6, SNHG12 and OC progression: with the clinical stage, tumor size and metastasis, which indicates the possible functional significance of hypermethylation of these genes. For 4 of the 5 genes: SNHG1, GAS5, SNHG6, SNHG12, a statistically significant pairwise positive correlation of methylation levels was revealed for the first time (rs > 0.35; p ≤ 0.001). Our data on co-methylation of these 4 genes are in agreement with the GEPIA 2.0 data (for 426 OC samples), revealing their co-expression (rs > 0.5; p < 0.001); the correlation of GAS5 and SNHG6 expression levels was confirmed by quantitative RT-PCR (rs = 0.46; p = 0.007). For lncRNA SNHG1, GAS5, SNHG6 and SNHG12, common miRNAs were predicted bioinformatically, potentially capable of interacting with one or more of them via the mechanism of competing endogenous RNAs. The mRNAs, the expression of which they are thus capable of influencing, were also predicted. The possible involvement of genes corresponding to these mRNAs in a number of processes significant for oncogenesis, including RNA processing and splicing and epithelial-mesenchymal transition, was studied. Thus, 4 lncRNAs of the SNHGs family were identified, which have similarities both in their regulation and in their putative biological functions in the pathogenesis of OC.

Biohimiâ. 2024;89(11):1982-2001
pages 1982-2001 views

Characterization of Structural Properties and Antimicrobial Activity of Complement System C3f Peptide

Krenev I.A., Egorova E.V., Khaydukova M.M., Mikushina A.D., Zabrodskaya Y.A., Komlev A.S., Eliseev I.E., Shamova O.V., Berlov M.N.

Abstract

The C3f peptide is a by-product of the regulation of the activated complement system with no firmly established function of its own. We have previously shown that C3f exhibits moderate antimicrobial activity against some Gram-positive bacteria in vitro. The occurrence of two histidine residues in the amino acid sequence of the peptide suggested an enhancement of its antimicrobial activity at lower pH and in the presence of metal cations, particularly zinc cations. Since such conditions can be realized in inflammatory foci, the study of the dependence of C3f activity on pH and the presence of metal cations provides an opportunity to assess the biological significance of the antimicrobial properties of the peptide. The peptide C3f and its analogs with histidine substitutions by lysines or serines, C3f[H/K] and C3f[H/S], were prepared by solid-phase synthesis. Using CD spectroscopy, we found that C3f contained a β-hairpin and unstructured regions; the presence of Zn2+ did not affect the conformation of the peptide. In the present work, it was shown that C3f can also exhibit antimicrobial activity against Gram-negative bacteria, in particular, Pseudomonas aeruginosa ATCC 27583. The action of the peptide on Ps. aeruginosa and Listeria monocytogenes EGD is accompanied by impairment of the barrier function of bacterial membranes. Zn2+ ions, unlike Cu2+ ions, enhanced the antimicrobial activity of C3f against L. monocytogenes, with 4- and 8-fold molar excess of Zn2+ being no more effective than a 20% excess. The activity of the C3f analogs was also enhanced to some extent by zinc ions. Thus, we hypothesize a histidine-independent formation of C3f–Zn2+ complexes leading to an increase in the total charge and antimicrobial activity of the peptide. In the presence of 0.15 M NaCl, C3f lost its activity regardless of the presence of Zn2+, indicating a minor role of C3f as an endogenous antimicrobial peptide. The presence of C3f abolished the bactericidal effect of Zn2+ against the zinc-sensitive Escherichia coli strain ESBL 521/17, indirectly confirming the interaction of the peptide with Zn2+. The activity of C3f against Micrococcus luteus A270, but not against L. monocytogenes, increased with decreasing pH. In this work, we show the significance of factors such as pH and metal cations in realizing the activity of antimicrobial peptides based on the example of C3f.

Biohimiâ. 2024;89(11):2002-2016
pages 2002-2016 views