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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Current Computer-Aided Drug Design</journal-id><journal-title-group><journal-title xml:lang="en">Current Computer-Aided Drug Design</journal-title><trans-title-group xml:lang="ru"><trans-title>Current Computer-Aided Drug Design</trans-title></trans-title-group></journal-title-group><issn publication-format="print">1573-4099</issn><issn publication-format="electronic">1875-6697</issn><publisher><publisher-name xml:lang="en">Bentham Science</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">644240</article-id><article-id pub-id-type="doi">10.2174/0115734099265663230926064638</article-id><article-categories><subj-group subj-group-type="toc-heading"><subject>Chemistry</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">A Novel Deep Learning Model for Drug-drug Interactions</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Abdul Raheem</surname><given-names>Ali</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name><surname>Dhannoon</surname><given-names>Ban</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff2"/></contrib></contrib-group><aff id="aff1"><institution>Department of Software, College of Information, University of Babylon</institution></aff><aff id="aff2"><institution>Department of Computer Science,, Al-Nahrain University,</institution></aff><pub-date date-type="pub" iso-8601-date="2024-05-01" publication-format="electronic"><day>01</day><month>05</month><year>2024</year></pub-date><volume>20</volume><issue>5</issue><issue-title xml:lang="ru"/><fpage>666</fpage><lpage>672</lpage><history><date date-type="received" iso-8601-date="2025-01-07"><day>07</day><month>01</month><year>2025</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Bentham Science Publishers</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Bentham Science Publishers</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/></permissions><self-uri xlink:href="https://rjeid.com/1573-4099/article/view/644240">https://rjeid.com/1573-4099/article/view/644240</self-uri><abstract xml:lang="en"><p id="idm46041443822640">Introduction:Drug-drug interactions (DDIs) can lead to adverse events and compromised treatment efficacy that emphasize the need for accurate prediction and understanding of these interactions.</p><p id="idm46041443826640">Methods:in this paper, we propose a novel approach for DDI prediction using two separate message-passing neural network (MPNN) models, each focused on one drug in a pair. By capturing the unique characteristics of each drug and their interactions, the proposed method aims to improve the accuracy of DDI prediction. The outputs of the individual MPNN models combine to integrate the information from both drugs and their molecular features. Evaluating the proposed method on a comprehensive dataset, we demonstrate its superior performance with an accuracy of 0.90, an area under the curve (AUC) of 0.99, and an F1-score of 0.80. These results highlight the effectiveness of the proposed approach in accurately identifying potential drugdrug interactions.</p><p id="idm46041443830608">Results:The use of two separate MPNN models offers a flexible framework for capturing drug characteristics and interactions, contributing to our understanding of DDIs. The findings of this study have significant implications for patient safety and personalized medicine, with the potential to optimize treatment outcomes by preventing adverse events. Conclusion: Further research and validation on larger datasets and</p><p id="idm46041443835664">Conclusion:Further research and validation on larger datasets and real-world scenarios are necessary to explore the generalizability and practicality of this approach.</p></abstract><kwd-group xml:lang="en"><kwd>Drug-drug interactions</kwd><kwd>deep learning</kwd><kwd>MPNN</kwd><kwd>GNN</kwd><kwd>SMIELS</kwd><kwd>model.</kwd></kwd-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Abdul Raheem, K.A; Dhannoon, N.B. Automating drug discovery using machine learning. Curr. Drug. Discov. Technol., 2023, 20(6), 79-86. doi: 10.2174/1570163820666230607163313</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Hu, G; Agarwal, P; Easton, JB Predicting synergism of cancer drugs using NCI-ALMANAC data. BMC Bioinformatics, 2016, 17(19), 478.</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Luo, Y.; Zhao, X.; Zhou, J. 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